Infectious Disease · PANCE / PANRE

COVID-19

Respiratory illness caused by SARS-CoV-2 — managed with antivirals (nirmatrelvir-ritonavir, remdesivir) and supportive care; vaccination remains the cornerstone of prevention.

Also known as: COVID-19, SARS-CoV-2, coronavirus, novel coronavirus

Overview

Acute respiratory illness caused by SARS-CoV-2, an enveloped positive-sense RNA betacoronavirus. Spectrum ranges from asymptomatic infection to severe pneumonia, ARDS, multi-organ failure, and post-acute sequelae (long COVID).

Epidemiology

Worldwide pandemic since 2020; >7 million confirmed deaths and likely far more excess deaths. Endemic transmission continues with periodic surges driven by new variants. Highest morbidity in older adults, immunocompromised, and those with cardiopulmonary, metabolic, and obesity-related comorbidities.

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Risk factors

  • Age ≥65, residence in long-term care
  • Cardiopulmonary disease (CAD, HF, COPD, asthma, OSA)
  • Diabetes, obesity (BMI ≥30), CKD, liver disease
  • Immunocompromise (transplant, chemotherapy, advanced HIV, biologics)
  • Pregnancy (especially third trimester)
  • Smoking, lower-income, racial/ethnic minorities (structural inequities)
  • Incomplete vaccination

Pathophysiology

SARS-CoV-2 spike protein binds ACE2 receptor (abundant on respiratory epithelium, vascular endothelium, GI tract) with TMPRSS2-mediated entry. Initial replication in upper airway; in severe disease, lower respiratory tract involvement with dysregulated immune response, endothelial dysfunction, thrombotic microangiopathy, and ARDS. Cytokine release ('cytokine storm') drives multi-organ injury. Post-acute syndromes likely reflect persistent inflammation, microvascular damage, autonomic dysfunction.

Clinical presentation

Symptoms

  • Variable — fever, cough, dyspnea, fatigue, myalgia, headache, sore throat, rhinorrhea, congestion
  • GI: nausea, vomiting, diarrhea, anorexia
  • Anosmia/ageusia (more common with earlier variants)
  • Severe disease (typically week 2): worsening dyspnea, hypoxia, respiratory failure, ARDS
  • Pediatric: usually mild; MIS-C (multisystem inflammatory syndrome) ~4-6 weeks post-infection — fever, rash, conjunctivitis, GI symptoms, shock (Kawasaki-like)
  • Long COVID: persistent fatigue, dyspnea, cognitive impairment ('brain fog'), POTS, post-exertional malaise, anosmia >12 weeks

Signs / physical exam

  • Fever, tachypnea, hypoxia (sometimes 'silent hypoxia' — low SpO2 without distress)
  • Bilateral crackles, sometimes wheezing
  • Often unremarkable exam in mild disease

Classic findings

Patient with new dyspnea, hypoxia disproportionate to chest exam, and bilateral peripheral/lower-lobe ground-glass opacities on CT — consider COVID-19. Silent hypoxia (SpO2 <90% with patient comfortable) is a clue.

Differential diagnosis

  • Influenza — Abrupt onset, myalgia prominent; rapid antigen/PCR; treat with oseltamivir within 48 h
  • RSV — Wheezing in young children, bronchiolitis; PCR
  • Bacterial pneumonia — Higher fevers, focal consolidation, productive purulent sputum, leukocytosis with left shift; sputum culture and procalcitonin
  • Pulmonary embolism — Pleuritic pain, sudden dyspnea, RV strain on echo; D-dimer/CTPA
  • Heart failure — Orthopnea, JVD, elevated BNP, cardiomegaly on CXR
  • Other respiratory viruses (rhinovirus, parainfluenza) — Multiplex PCR
  • Atypical pneumonia (Mycoplasma, Chlamydia, Legionella) — Diffuse infiltrates, hyponatremia for Legionella; macrolide/doxycycline-responsive

Diagnostic workup

Diagnostic criteria

Positive SARS-CoV-2 RT-PCR or antigen test in symptomatic patient or exposed contact.

Labs

  • SARS-CoV-2 RT-PCR (gold standard) or rapid antigen test (good for symptomatic, less sensitive in pre-symptomatic phase)
  • CBC (lymphopenia common), CMP, LDH, ferritin, D-dimer, CRP, procalcitonin (low in pure viral; may help guide antibiotic decisions), troponin if cardiac symptoms
  • ABG if hypoxic; consider blood cultures if concern for bacterial superinfection
  • Coagulation studies in severe disease (DVT/PE risk increased)

Imaging

  • Chest X-ray — bilateral patchy or peripheral infiltrates
  • CT chest (if needed) — peripheral ground-glass opacities, often bilateral and lower lobe; 'crazy paving' in severe disease
  • Echocardiography if myocarditis suspected or hemodynamic compromise

Diagnostic algorithm

Disease SeverityDefinitionFirst-line Therapy
Mild (outpatient, high-risk)Sx without hypoxia, risk factorsPaxlovid PO x 5 d; remdesivir if contraindicated
Moderate-severe (hospitalized)SpO2 <94% on RA, needs O2Remdesivir + dexamethasone
Severe (high O2/HFNC/NIV)Needs HFNC/NIVAbove + tocilizumab or baricitinib
Critical (mechanical vent/ICU)Vent or vasopressorsDexamethasone + tocilizumab/baricitinib; lung-protective vent
MIS-C (pediatric)Post-COVID hyperinflammationIVIG + steroids; cardiology consult
NIH-aligned COVID-19 therapy by disease severity.

Treatment

First-line

  • Outpatient, high-risk for progression (within 5-7 days of symptom onset):
  • • Nirmatrelvir-ritonavir (Paxlovid) 300/100 mg PO BID × 5 days — first-line; many drug interactions via CYP3A4; renal dose adjust
  • • Remdesivir 200 mg IV day 1, then 100 mg IV daily × 2 more days (outpatient infusion) — alternative when Paxlovid contraindicated
  • • Molnupiravir 800 mg PO BID × 5 days — third-line; modest efficacy; contraindicated in pregnancy
  • Hospitalized, requiring supplemental oxygen:
  • • Remdesivir × 5 days
  • • Dexamethasone 6 mg PO/IV daily × up to 10 days (RECOVERY trial — mortality benefit if oxygen required)
  • • Add immunomodulator if progressing (high oxygen need or ICU): tocilizumab (anti-IL-6) or baricitinib (JAK inhibitor)
  • Anticoagulation: prophylactic dose enoxaparin for hospitalized non-ICU patients; therapeutic dose in select non-ICU patients per ACTIV-4a; prophylactic dose in ICU
  • Lung-protective ventilation (TV 6 mL/kg IBW), prone positioning for ARDS

Second-line / adjunct

  • Convalescent plasma generally not recommended (limited efficacy in most settings)
  • Monoclonal antibodies — variable activity by variant; many de-authorized due to emerging resistance
  • Tixagevimab-cilgavimab (Evusheld) — pre-exposure prophylaxis (de-authorized 2023 due to variant resistance)
  • Updated mRNA vaccines (Pfizer-BioNTech, Moderna) and protein-subunit vaccine (Novavax) — primary prevention; recommendations updated periodically
  • Long COVID: symptom-targeted multidisciplinary care; pulmonary rehab, cognitive rehab, autonomic management

Complications

  • ARDS, secondary bacterial pneumonia
  • Thromboembolism (DVT, PE, stroke, MI)
  • Myocarditis, arrhythmias, heart failure
  • AKI, hepatic dysfunction
  • Encephalopathy, Guillain-Barre, stroke
  • Multisystem inflammatory syndrome in children (MIS-C) and rarely adults (MIS-A)
  • Post-acute sequelae (long COVID): persistent dyspnea, fatigue, cognitive impairment, POTS
  • Death (varies by age, comorbidity, vaccination, and variant)

PANCE pearls

  • Paxlovid is first-line outpatient antiviral for high-risk patients — must be started within 5 days of symptom onset (remdesivir window extends to 7 days); review drug interactions before prescribing.
  • Dexamethasone benefits ONLY patients requiring supplemental oxygen — DO NOT give to mild outpatient disease (RECOVERY trial showed harm signal in non-oxygen-requiring patients).
  • Silent hypoxia — patients can have SpO2 in the 80s with surprisingly minimal distress; pulse oximetry essential in outpatient triage.
  • Vaccination markedly reduces severe disease and death; bivalent/updated boosters target circulating variants.
  • Long COVID management requires multidisciplinary, symptom-driven approach; rule out reversible cardiopulmonary disease (PE, myocarditis).

References

  • NIH 2024 — COVID-19 Treatment Guidelines (covid19treatmentguidelines.nih.gov)
  • RECOVERY 2021 — Dexamethasone in Hospitalized Patients with Covid-19 (NEJM)
  • EPIC-HR — Hammond et al., Oral Nirmatrelvir for High-Risk, Nonhospitalized Adults with Covid-19 (NEJM 2022)
  • ACTIV-4a — Therapeutic Anticoagulation with Heparin in Noncritically Ill Patients with Covid-19 (NEJM 2021)

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Educational use only. This outline is a study aid for PA students and is not medical advice or a substitute for clinical judgment. FirstPassPA is an independent study tool and is not affiliated with, endorsed by, or sponsored by NCCPA. PANCE® and PANRE® are registered trademarks of the National Commission on Certification of Physician Assistants.