Acute Pyelonephritis
Upper urinary tract infection involving renal parenchyma; fever, flank pain, CVA tenderness.
Also known as: acute pyelonephritis, upper UTI, kidney infection
Overview
Bacterial infection of the renal parenchyma and collecting system, typically resulting from ascending lower urinary tract infection. Characterized by fever, flank pain, costovertebral angle (CVA) tenderness, and pyuria, often with bacteremia.
Epidemiology
Incidence ~250,000 cases/year in the US. More common in women (especially aged 15-29), but more severe in men, the elderly, pregnant women, and diabetics. Hospital admission required in ~20%.
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Risk factors
- Untreated or inadequately treated lower UTI
- Female anatomy, sexual activity
- Pregnancy (urinary stasis, ureteric dilation)
- Diabetes mellitus (impaired bladder emptying, immune dysfunction)
- Urinary tract obstruction (stones, BPH, tumor, stricture)
- Indwelling catheter, recent instrumentation
- Immunocompromise, prior renal transplant
- Vesicoureteral reflux (particularly in children)
Pathophysiology
Uropathogens (E. coli causes ~75-90%) ascend from the bladder via the ureters to the renal pelvis and parenchyma. P-fimbriae allow attachment to uroepithelial cells of the upper tract. Inflammatory response with neutrophil infiltration causes parenchymal damage, microabscesses, and systemic inflammatory response with fever and bacteremia. Obstruction worsens prognosis by impairing antibiotic delivery and promoting abscess formation.
Clinical presentation
Symptoms
- Fever (often >38.5°C), chills, rigors
- Flank or back pain (unilateral or bilateral)
- Nausea and vomiting
- Lower UTI symptoms — dysuria, frequency, urgency — preceding or accompanying upper tract symptoms
- Malaise, fatigue, anorexia
- Elderly: may present atypically with confusion, falls, or simply nonspecific decline
Signs / physical exam
- Fever, tachycardia; hypotension in severe cases (urosepsis)
- Costovertebral angle (CVA) tenderness — classic finding on percussion
- Suprapubic tenderness if concurrent cystitis
- Signs of dehydration
- Hemodynamic instability suggests urosepsis — requires aggressive resuscitation
Classic findings
Fever + flank pain + CVA tenderness + pyuria = pyelonephritis. Add hypotension or organ dysfunction = urosepsis.
Differential diagnosis
- Cystitis — Lower tract symptoms only; absence of fever, flank pain, CVA tenderness, systemic illness
- Nephrolithiasis with infection — Severe colicky flank pain + fever + obstructive stone on imaging — urologic emergency
- Renal/perinephric abscess — Persistent fever despite antibiotics; CT shows fluid collection; requires drainage
- Acute appendicitis — Right-sided pain, RLQ tenderness, leukocytosis; may mimic right pyelonephritis
- Cholecystitis / hepatitis — Right upper quadrant pain, Murphy sign, hepatic LFT abnormalities
- Pelvic inflammatory disease — Lower abdominal/pelvic pain, cervical motion tenderness, vaginal discharge, sexually active women
- Diverticulitis — Left lower quadrant pain, fever, CT findings
Diagnostic workup
Diagnostic criteria
Clinical diagnosis: classic symptoms (fever, flank pain, CVA tenderness) + pyuria + bacteriuria. Urine culture confirms organism and susceptibility.
Labs
- Urinalysis with microscopy — pyuria, bacteriuria, WBC casts (specific for upper tract), nitrites, leukocyte esterase
- Urine culture and susceptibility — ALWAYS obtain (vs cystitis where culture is optional)
- Blood cultures × 2 if febrile, septic, hospitalized, immunocompromised, or pregnant
- CBC — leukocytosis with left shift
- BMP — assess renal function, electrolytes
- Lactate, procalcitonin if sepsis suspected
- Beta-hCG in reproductive-age women
Imaging
- Imaging not required in most uncomplicated pyelonephritis with prompt improvement
- CT abdomen/pelvis with contrast if: failure to improve after 48-72 h of appropriate antibiotics, sepsis, suspected obstruction or abscess, recurrent pyelonephritis, atypical course, history of stones, men
- Renal ultrasound — first-line in pregnancy and children, or if CT contrast contraindicated
- Findings: enlarged kidney, perinephric stranding, focal wedge-shaped hypoenhancement, abscess, hydronephrosis
Diagnostic algorithm
| Feature | Cystitis | Pyelonephritis |
|---|---|---|
| Anatomic site | Bladder | Renal parenchyma + pelvis |
| Fever / chills | Absent | Present |
| Flank pain / CVA tenderness | Absent | Present |
| Systemic illness | Absent | Often present |
| WBC casts | Absent | Present (specific) |
| Urine culture | Optional | Required |
| Blood cultures | Not indicated | If febrile/septic |
| Imaging | Not required | If failure to improve, sepsis, obstruction suspected |
| Duration of antibiotics | 3-5 days | 5-14 days (depends on agent) |
Treatment
First-line
- Outpatient (mild, hemodynamically stable, tolerating oral, no obstruction):
- Fluoroquinolone (pyelo) — ciprofloxacin 500 mg PO BID × 7 days or levofloxacin 750 mg PO daily × 5 days — first-line if local resistance <10%
- TMP-SMX DS PO BID × 14 days if susceptible (avoid empiric if resistance unknown)
- Consider initial single dose of long-acting IV antibiotic (ceftriaxone 1 g IV, ertapenem 1 g IV) followed by oral therapy
- Avoid nitrofurantoin and fosfomycin (do NOT achieve adequate parenchymal levels for pyelonephritis)
- Inpatient (severe illness, sepsis, pregnancy, inability to tolerate oral, obstruction, suspected resistant organism):
- Ceftriaxone 1-2 g IV daily, or piperacillin-tazobactam, or carbapenem (meropenem, imipenem, ertapenem) if ESBL risk
- Add ampicillin if Enterococcus suspected (or empiric if catheter-related)
- Aminoglycoside (gentamicin) addition in critically ill or if pseudomonal coverage needed
- Transition to oral once culture susceptibilities available and patient improving; total course 7-14 days
Second-line / adjunct
- Drain obstruction if present — percutaneous nephrostomy or ureteral stent — urgent if obstructed infected system
- Drain abscess if >3-5 cm — percutaneous drainage
- Aggressive IV fluid resuscitation, vasopressors as needed for septic shock
- Antipyretics and analgesics
- Pregnancy: hospitalize for IV antibiotics; ceftriaxone, ampicillin-gentamicin, or cefepime; total 10-14 days
- Reassess at 48-72 h — failure to improve warrants imaging to exclude obstruction or abscess
Complications
- Urosepsis with multi-organ dysfunction
- Renal/perinephric abscess
- Emphysematous pyelonephritis — gas in renal parenchyma; almost exclusively in diabetics; surgical emergency
- Papillary necrosis — diabetes, sickle cell, analgesic abuse
- Chronic pyelonephritis with scarring → CKD/hypertension
- Pregnancy: preterm labor, low birth weight, sepsis
- Xanthogranulomatous pyelonephritis — chronic granulomatous variant requiring nephrectomy
PANCE pearls
- WBC casts in the urine are specific for upper tract infection (pyelonephritis), not cystitis.
- Fever in a patient with a urinary stone = obstructed infected system → urgent decompression (stent or percutaneous nephrostomy) before definitive stone treatment.
- Emphysematous pyelonephritis: gas in renal parenchyma on CT, primarily in diabetics; high mortality without prompt drainage and broad-spectrum antibiotics.
- Pregnancy pyelonephritis ALWAYS warrants hospitalization and IV antibiotics — high risk of preterm labor and sepsis.
- Always image (CT) if patient does not improve within 48-72 hours of appropriate antibiotics to exclude obstruction or abscess.
- In men, treat 7-14 days and evaluate for prostatitis (digital rectal exam, prolonged course if prostatic involvement).
References
- IDSA 2011 — International Clinical Practice Guidelines for Acute Uncomplicated Pyelonephritis (Gupta et al., CID 2011)
- EAU 2024 — European Association of Urology Guidelines on Urological Infections 2024
- IDSA 2024 — IDSA 2024 Focused Update on Complicated UTI
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